T. Blovský, K. Šindelka, Z. Limpouchová, and K. Procházka. Self-Assembly of Symmetric Copolymers in Slits with Inert and Attractive Walls. Polymers, MDPI AG, volume 15, issue 22, November 2023.

R. K. Raya, M. Štěpánek, Z. Limpouchová, K. Procházka, M. Svoboda, M. Lísal, E. Pavlova, A. Skandalis, and S. Pispas. Onion Micelles with an Interpolyelectrolyte Complex Middle Layer: Experimental Motivation and Computer Study. American Chemical Society (ACS), volume 53, issue 16, August 2020.

X. Wang, K. Procházka, and Z. Limpouchová. Pore size effect on the separation of polymers by interaction chromatography. A Monte Carlo study. Analytica Chimica Acta, Elsevier BV, volume 1064, August 2019.

X. Wang, Z. Limpouchová, and K. Procházka. Separation of polymers differing in their chain architecture by interaction chromatography: Phase equilibria and conformational behavior of polymers in strongly adsorbing porous media. Polymer, Elsevier BV, volume 175, June 2019.

A. Fanova, K. Šindelka, M. Uchman, Z. Limpouchová, S. K. Filippov, S. Pispas, K. Procházka, and M. Štěpánek. Coassembly of Poly(N-isopropylacrylamide) with Dodecyl and Carboxyl Terminal Groups with Cationic Surfactant: Critical Comparison of Experimental and Simulation Data. Macromolecules, American Chemical Society (ACS), volume 51, issue 18, September 2018.

K. Šindelka, Z. Limpouchová, and K. Procházka. Computer study of the solubilization of polymer chains in polyelectrolyte complex cores of polymeric nanoparticles in aqueous media. Physical Chemistry Chemical Physics, Royal Society of Chemistry (RSC), volume 20, issue 47, 2018.

Z. Posel, M. Svoboda, Z. Limpouchová, M. Lísal, and K. Procházka. Adsorption of amphiphilic graft copolymers in solvents selective for the grafts on a lyophobic surface: a coarse-grained simulation study. Physical Chemistry Chemical Physics, Royal Society of Chemistry (RSC), volume 20, issue 9, 2018.

J. Ahn, T. Chang, X. Wang, Z. Limpouchová, and K. Procházka. Influence of the Chain Architecture and the Presence of End-Groups or Branching Units Chemically Different from Repeating Structural Units on the Critical Adsorption Point in Liquid Chromatography. Macromolecules, American Chemical Society (ACS), volume 50, issue 21, October 2017.

M. Lísal, K. Sindelka, L. Suchá, Z. Limpouchová, and K. Procházka. Dissipative particle dynamics simulations of polyelectrolyte self-assemblies. Methods with explicit electrostatics. Polymer Science, Series C, Pleiades Publishing Ltd, volume 59, issue 1, August 2017.

K. šindelka, Z. Limpouchová, M. štěpánek, and K. Procházka. Stabilization of coated inorganic nanoparticles by amphiphilic copolymers in aqueous media. Dissipative particle dynamics study. Colloid and Polymer Science, volume 295, issue 8, August 2017.

L. Suchá, Z. Limpouchová, and K. Procházka. Conformational behavior of polymer chains of different architectures in strongly endothermic solvent mixtures: specific solvation effects. Colloid and Polymer Science, Springer Nature, volume 295, issue 8, April 2017.

K. Procházka, K. Šindelka, X. Wang, Z. Limpouchová, and M. Lísal. Self-assembly and co-assembly of block polyelectrolytes in aqueous solutions. Dissipative particle dynamics with explicit electrostatics. Molecular Physics, Informa UK Limited, volume 114, issue 21, November 2016.

K. Procházka, K. Šindelka, X. Wang, Z. Limpouchová, and M. Lísal. Self-assembly and co-assembly of block polyelectrolytes in aqueous solutions. Dissipative particle dynamics with explicit electrostatics. Molecular Physics, Informa UK Limited, volume 114, issue 21, November 2016.

X. Wang, Z. Limpouchová, and K. Procházka. Computer study of chromatographic separation of mixtures of H-shaped and linear polymers in good and {\texttheta}-solvents. Polymer, Elsevier BV, volume 104, November 2016.

X. Wang, M. Lísal, K. Procházka, and Z. Limpouchová. Computer Study of Chromatographic Separation Process: A Monte Carlo Study of H-Shaped and Linear Homopolymers in Good Solvent. Macromolecules, American Chemical Society (ACS), volume 49, issue 3, January 2016.

K. Šindelka, Z. Limpouchová, M. Lísal, and K. Procházka. The electrostatic co-assembly in non-stoichiometric aqueous mixtures of copolymers composed of one neutral water-soluble and one polyelectrolyte (either positively or negatively charged) block: a dissipative particle dynamics study. Physical Chemistry Chemical Physics, Royal Society of Chemistry (RSC), volume 18, issue 24, 2016.

M. Lísal, Z. Limpouchová, and K. Procházka. The self-assembly of copolymers with one hydrophobic and one polyelectrolyte block in aqueous media: a dissipative particle dynamics study. Physical Chemistry Chemical Physics, Royal Society of Chemistry (RSC), volume 18, issue 24, 2016.

K. Šindelka, Z. Limpouchová, M. Lísal, and K. Procházka. Dissipative Particle Dynamics Study of Electrostatic Self-Assembly in Aqueous Mixtures of Copolymers Containing One Neutral Water-Soluble Block and One Either Positively or Negatively Charged Polyelectrolyte Block. Macromolecules, American Chemical Society (ACS), volume 47, issue 17, August 2014.

F. Uhlík, P. Košovan, Z. Limpouchová, K. Procházka, O. V. Borisov, and F. A. M. Leermakers. Modeling of Ionization and Conformations of Starlike Weak Polyelectrolytes. Macromolecules, American Chemical Society (ACS), volume 47, issue 12, June 2014.

Z. Posel, Z. Limpouchová, K. Šindelka, M. Lísal, and K. Procházka. Dissipative Particle Dynamics Study of the {pH}-Dependent Behavior of Poly(2-vinylpyridine)-block-poly(ethylene oxide) Diblock Copolymer in Aqueous Buffers. Macromolecules, American Chemical Society (ACS), volume 47, issue 7, March 2014.

J. Kuldová, P. Košovan, Z. Limpouchová, and K. Procházka. Computer Study of the Association Behavior of Gradient Copolymers: Analysis of Simulation Results Based on a New Algorithm for Recognition and Classification of Aggregates. Macromolecular Theory and Simulations, Wiley, volume 22, issue 1, December 2012.

Z. Preisler, P. Košovan, J. Kuldová, F. Uhlík, Z. Limpouchová, K. Procházka, and F. A. M. Leermakers. Depletion profiles for dilute solutions of linear chains, stars and H-branched molecules by self-consistent field calculations and Monte Carlo simulations. Soft Matter, Royal Society of Chemistry (RSC), volume 7, issue 21, 2011.